...
| Anchor | ||||
|---|---|---|---|---|
|
This documentation provides general I2B2 and TriNetX tutorials as well as USF specific tutorials on how to use I2B2 and TriNetX. It also provides information on the source information that USF feeds into the systems.
| Info | ||||
|---|---|---|---|---|
| ||||
I2b2 Video Tutorials (not specific to USF Health) Anchor Topic1 Topic1
Please note that ontologies and source systems in USF's i2b2 instance will differ from the ones demonstrated in the i2b2 video tutorials available on youtube. An overview of the ontologies and source systems relevant to the USF system is available in the "USF i2b2 Instance Quick Summary" section.
- Introduction video: https://www.youtube.com/watch?v=ZzSwtnTgfgg
- User interface overview: https://www.youtube.com/watch?v=MoKEGZ6VhVg
- Examples:
- https://www.youtube.com/watch?v=kzzPGbEGN0g (diagnosis, demographics (age, race), inclusion criteria)
- https://www.youtube.com/watch?v=8JRx8zcWMAU (diagnosis, medication, exclusion criteria)
| Anchor | ||||
|---|---|---|---|---|
|
Note: you can skip the specific slides in the panopto recording by clicking on the picture of the slide in the bottom right pane
Part 1: General overview of i2b2 and the USF patient data set
https://hsccapture1.health.usf.edu/Panopto/Pages/Viewer.aspx?id=2d930735-4803-4b46-a7cd-31e0884b498b (duration: 20 mins)
Part 2: i2b2 training
https://hsccapture1.health.usf.edu/Panopto/Pages/Viewer.aspx?id=19886402-ddbf-4a5d-88fc-087877c80cfc (duration: 1 h 12 mins)
| Anchor | ||||
|---|---|---|---|---|
|
Below is the quick summary of the i2b2 USF instance.
- Source systems:
- Allscripts (historical data only starting 01/01/2003)
- GE (historical data only starting 01/01/2003)
- EPIC
- List of ontologies and corresponding source systems:
| I2B2 Ontology | Source system(s) | Notes |
|---|---|---|
| Demographics | GE, EPIC | Patient records from both sources are merged (prevailing source system is EPIC; GE patient record is pulled only if no EPIC record exists) |
| Diagnoses | GE, EPIC | Billing data |
| Laboratory Tests | Allscripts, EPIC | |
| Medications | Allscripts, EPIC | |
| Problem List | GE, EPIC | Billing data |
| Procedures | GE, EPIC | Billing data |
| Providers | Allscripts, GE, EPIC | Provider records from all sources are merged (prevailing source system is EPIC >> GE >> Allscripts) |
| Smoking Status | Allscripts, EPIC | Allscripts and EPIC various smoking statuses are mapped to the following values: CURRENT |
| Visit Details | Allscripts, GE, EPIC | |
| Vital Signs | Allscripts. EPIC |
| Anchor | ||||
|---|---|---|---|---|
|
For details on Allscripts and GE data extract click on this link: /wiki/spaces/I2B2/pages/12262736062
Anchor Topic5 Topic5
TriNetX Video Tutorials (not specific to USF Health)
| Topic5 | |
| Topic5 |
TriNetX video tutorials are available within the application. Once you are logged into TriNetX application (https://live.trinetx.com/#/signin/) click "Help" link in the top right corner. The following list of short video tutorials are available:
| Anchor | ||||
|---|---|---|---|---|
|
Note: you can skip the specific slides in the panopto recording by clicking on the picture of the slide in the bottom right pane
Part 3: TriNetX training
https://hsccapture1.health.usf.edu/Panopto/Pages/Viewer.aspx?id=c443212e-dd60-4512-9591-4ba602e05b70 (duration: 1 hr 10 mins)